Coalescent v.1.3.0



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Description

It supports the following: 1. An API framework for coalescent analysis 2. A console (configuration file based) client application based on the framework 3. A Netbeans platform application based on the framework


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  • License:Freeware
  • Category:Science

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System Requirements

Coalescent requires Mac, Windows, Linux.

Coalescent v.1.3.0 Copyright

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Coalescent  v.1.3.0

It supports the following: 1.

COAL  v.1.0

COAL is a software for computing gene tree probabilities and simulating gene trees in species trees under the coalescent model. A tool for computing gene tree probabilities.

Recodon  v.1.6.0

Recodon simulates coding DNA sequences with recombination, migration and demographic periods. Coalescent simulations of codon models with recombination, migration and demography.

NetRecodon  v.5.0.6

Coalescent simulation of intracodon recombination. NetRecodon is a population genetic simulator that generates samples of nucleotide and codon sequences from haploid/diploid populations with intracodon recombination, migration, growth and dated tips.

STEM (Species Tree Estimation using Maximum)  v.1.1

STEM (Species Tree Estimation using Maximum) is is a software for inferring maximum likelihood species trees from a collection of estimated gene trees under the coalescent model.

Fastsimcoal  v.1.1.1

Fast sequential Markov coalescent simulation of genomic data. fastsimcoal help you efficiently generate genetic diversity for different types of markers along large genomic regions, for both present or ancient samples.

DnaSP  v.5.10.0001

DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of nucleotide polymorphism from aligned DNA sequence data.

SIMCOAL  v.1.0

Simulate molecular genetic diversity with the help of this tool. SIMCOAL is a computer software for the simulation of molecular genetic diversity in an arbitrary number of haploid populations examined for a set of fully linked loci.

DnaSP (DNA Sequence Polymorphism)  v.5.10.01

Nucleotide polymorphism analysis made easy. DnaSP (DNA Sequence Polymorphism), is a utility package for the analysis of nucleotide polymorphism from aligned DNA sequence data.

Migrate-n  v.3.2.6

Migration rates estimation made easy. Migrate-n can estimate population parameters, impactful population sizes and migration rates of n populations, using genetic data.

AquaSplatche  v.1.0

AquaSplatche is a software to simulate genetic diversity based on a realistic vectorized environment. Simulate genetic diversity with this tool.Classical models of structured populations do not apply well to populations of freshwater fishes,

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